PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512106.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 1245aa    MW: 137633 Da    PI: 6.1379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512106.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.31e-0612221245226
                      -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                      ++++C+ f+++G+Ck G++C + H+
  XP_004512106.1 1222 GQRICK-FYESGYCKKGASCAYLHP 1245
                      6899**.8899*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.1E-865126IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.3E-974134IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155681.92E-1981126No hitNo description
SMARTSM002491.8E-781127IPR001965Zinc finger, PHD-type
PROSITE patternPS01359082142IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475929.16E-22283361IPR003121SWIB/MDM2 domain
SMARTSM001517.0E-4283365IPR019835SWIB domain
Gene3DG3DSA:1.10.245.101.5E-25284367IPR003121SWIB/MDM2 domain
PfamPF022011.9E-14287360IPR003121SWIB/MDM2 domain
PROSITE profilePS5136024.963419552IPR004343Plus-3 domain
SMARTSM007191.2E-39419529IPR004343Plus-3 domain
SuperFamilySSF1590429.42E-30420549IPR004343Plus-3 domain
PfamPF031261.3E-23424527IPR004343Plus-3 domain
SuperFamilySSF552772.09E-17715769IPR003169GYF domain
CDDcd000725.98E-17716771No hitNo description
PROSITE profilePS5082915.047716770IPR003169GYF domain
SMARTSM004445.4E-19717772IPR003169GYF domain
Gene3DG3DSA:3.30.1490.407.8E-18718770IPR003169GYF domain
PfamPF022139.6E-13719761IPR003169GYF domain
PROSITE profilePS5010315.25312201245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.83E-612201244IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-412221245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-412241244IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1245 aa     Download sequence    Send to blast
MEQAKTETPA TAPAPESKLV PMKASSDVNM TERDGGCCTP KLDAPVTGAD GADSKKKRGR  60
PAKGIPKTAP PPKQKKDDED VCFICFDGGS LVLCDRRGCP KAYHPACVKR DEAFFRSKAK  120
WNCGWHICSS CQKAAHYWCY TCTYSLCKGC IQNADFVCVR GNKGLCGICK KTIMLIENSA  180
QGNKEMCEVD FDDKSSWEYL FKVYWIYLKE NLSLTFDELL QARNPSKGAA PMVQTSHQLN  240
HLKDNKGSGP ENSCIDIESN NGKDKKSTGT SGGETGVPLP ECTRWASKEL LEFVSHMKNG  300
DTSLMSQFDV QNLLLEYIKK NNLRDPQQKS QIVCDSRLVN LFGKARLGYI EMLMLLEPHF  360
LVKDNTRAEN TFGAGIVDAL ANEGEAIVKQ SILVNDKRST ISKKADVLVP LNNQDAYAAI  420
NAHNINLIYL RRNLMESLTD DTERIHEKVV GSFVRIRISS GDQKQDMYRL VQVVGITKVA  480
EPYKIGTRKT DIKLEILNLN RKEVISIDEI SNQEFFEDEC KRLRQSIKYG LSKRLTVGEI  540
LNKALTFQEI RVNDLLEAEI LRLNNLRDRA SEKGHRKELK ECVEKLQLLN SLEERQRRLH  600
EIPDVHSDPN LDSLYESDED AGESDDNKQD GKIPIFSRIW DGVLNGVGGR TRDLTTTSDP  660
NGNICLVKDH INPNETAIDD STNIVMKSEV SSVAVDISSS RLCTGIDQPF DDFMNDKSWH  720
YQDPSGKVQG PFSMLQLYKW NASGHFPPDL RIWRIDEKQG NSILLTDALN GKCSKNVSLQ  780
PNSPLLSLGA SVALGDNESN QDGERNSIRD AISADSQIIE QRSELKVDDT STQSNGKDES  840
VRSNEWHDQS HAYPSLQPTA FSEKSNENHT KKLSEDHGIE KISEDDGNHG SNRTSGGQSN  900
SGQNNQKQSD SEDNSGQSSG QNLRRPNLNI SSNCLVATSA HVSGTRTSPH KLGFDLHLPP  960
SPPACNTTTW QAIIGEPDDF DESVSDLLAE VEAMESLGGL ESPTSIMKRS EELADGSKNL  1020
CLSFADFSPM LDAGKGDALS STCDLQLPSQ STAAVEPLQQ ADVHHHHQRI SEELSSRNSK  1080
VDVGTKNICV SSNQWESGSE TSPIFPSAAT LGMTVDTTWR LGLESTHLGW SGMDQRNANT  1140
SWGVGQTAVN ENRSSNSCTS VVTPSFGDSQ TRYGSDRFSV PRDRGFPGHS REPGLVRGRT  1200
AWNRQPVFGV GNGGSYRPLP KGQRICKFYE SGYCKKGASC AYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-13721481081Histone-lysine N-methyltransferase NSD3
4gnd_C1e-13721481081Histone-lysine N-methyltransferase NSD3
4gne_A1e-13721481081Histone-lysine N-methyltransferase NSD3
4gnf_A1e-13721481081Histone-lysine N-methyltransferase NSD3
4gng_A1e-13721481081Histone-lysine N-methyltransferase NSD3
4gng_D1e-13721481081Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541880.0CR954188.2 Medicago truncatula chromosome 5 clone mth2-193f16, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512106.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLG7KGD40.0G7KGD4_MEDTR; Uncharacterized protein
STRINGGLYMA01G37393.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding